Pairwise Alignments

Query, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., exonuclease IX (RefSeq) from Shewanella amazonensis SB2B

 Score =  170 bits (431), Expect = 3e-47
 Identities = 95/253 (37%), Positives = 148/253 (58%), Gaps = 4/253 (1%)

Query: 29  LVIIDALNLIRRVHSAQPDPNDITRTAETTTRTLQRIINEAQPSHMIAVFDHHLSDRGWR 88
           L+IID LNL+RR+H+A PD  D+    +   +  ++++   QP+H   V+D       WR
Sbjct: 4   LLIIDGLNLVRRIHAALPDEGDMDTLYDRVAQACRKLLRGHQPTHCAIVWDGDAIS--WR 61

Query: 89  AELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACKVAAHQE 148
             L   YK  RKPMP+ L +G+ A++     L + S+ ++  EADD++ATLACK+AA   
Sbjct: 62  KHLYEDYKKGRKPMPEALAKGLPALKTKLETLDVHSVNADS-EADDIIATLACKLAATGG 120

Query: 149 KVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVSSSQI 208
           +  I+STDKG  QL+SP ++  D+F  ++ D      + G+   QL DY  L G S ++I
Sbjct: 121 EAIIVSTDKGLLQLMSPHIRQWDHFAGQFFDIEAFEAKLGIERHQLLDYIALCGDSGNKI 180

Query: 209 PGVAGIGPKAAKEILNQFSSIEEAYAS-PELPAKYRKKLDPHIEMARICKQVSALKTDIE 267
           PG+ GIGPK+A E+L  + S+   Y S   L ++   KL    +MAR+  +++ L+T++ 
Sbjct: 181 PGIPGIGPKSASELLRTYRSLANLYHSLGTLGSRQANKLREGRDMARLSYKLAKLQTELP 240

Query: 268 LGFNLQDIRFNSS 280
           L   L D+R N S
Sbjct: 241 LHLKLSDLRVNPS 253