Pairwise Alignments

Query, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., exodeoxyribonuclease IX (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  154 bits (389), Expect = 2e-42
 Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 4/217 (1%)

Query: 64  RIINEAQPSHMIAVFDHHLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGID 123
           +++    P+H+  V+D    +  WR +L P YK  RKPMP+ L  G+ A+Q+    L I 
Sbjct: 14  KLLRIHHPTHVAVVWDG--DEISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQ 71

Query: 124 SLLSEGDEADDLVATLACKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFI 183
           S+ +   EADD++ATLA K A  Q +  I+STDKG+ QL  P +   D+F Q++L+   +
Sbjct: 72  SIYAAA-EADDVIATLATKTAKAQGEALIVSTDKGFSQLNHPRISQWDHFNQQYLNIAEL 130

Query: 184 AQEFGVTPAQLTDYWGLTGVSSSQIPGVAGIGPKAAKEILNQFSSIEEAYAS-PELPAKY 242
            Q+ GV  +Q  D   L G S ++IPG+ GIGPK+A E+L  F ++   ++S P L AK 
Sbjct: 131 EQKLGVDRSQFLDLMALAGDSGNKIPGIPGIGPKSAAELLRTFRTLATLFSSLPNLGAKQ 190

Query: 243 RKKLDPHIEMARICKQVSALKTDIELGFNLQDIRFNS 279
            KKL    +MAR+  ++  L+TD+ L  NL+D R NS
Sbjct: 191 AKKLAEGRDMARLSYKLVQLQTDLPLNINLRDFRVNS 227