Pairwise Alignments

Query, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., exonuclease IX (RefSeq) from Shewanella sp. ANA-3

 Score =  180 bits (457), Expect = 3e-50
 Identities = 99/250 (39%), Positives = 151/250 (60%), Gaps = 4/250 (1%)

Query: 30  VIIDALNLIRRVHSAQPDPNDITRTAETTTRTLQRIINEAQPSHMIAVFDHHLSDRGWRA 89
           +IID LNL+RR+++A PD ND+    E  +    +++    P+H+  V+D    +  WR 
Sbjct: 5   LIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDG--DEMSWRK 62

Query: 90  ELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACKVAAHQEK 149
           +L P YK  RKPMP+ L  G+ A+Q+    + I S+ +   EADD++ATLA K A  Q +
Sbjct: 63  QLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSIYAAA-EADDVIATLAMKTAKAQGE 121

Query: 150 VTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVSSSQIP 209
             I+STDKG+ QL  P +   D+F Q++L+   + Q+ GV  +Q  D   L G S ++IP
Sbjct: 122 AVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLGVDRSQFLDLLALAGDSGNKIP 181

Query: 210 GVAGIGPKAAKEILNQFSSIEEAYAS-PELPAKYRKKLDPHIEMARICKQVSALKTDIEL 268
           G+AGIGPK+A E+L  F ++   ++S P L AK  KKL    +MAR+  +++ L+ D+ L
Sbjct: 182 GIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLPL 241

Query: 269 GFNLQDIRFN 278
             NL+D R N
Sbjct: 242 NINLKDFRVN 251