Pairwise Alignments

Query, 306 a.a., transcriptional regulator GcvA from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  439 bits (1129), Expect = e-128
 Identities = 215/299 (71%), Positives = 261/299 (87%), Gaps = 4/299 (1%)

Query: 1   MSRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSL 60
           MSRRLPPLN++K FEAAARHLSFTRAAEELFVTQAAVSHQIKALE+FLGLKLFRR+NRSL
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  LLTEEGQSYFLDIKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQE 120
           LLTEEGQSYFLDIKDIF+ L++ATD+LL RS  G+LT+S+ PSFAIQWLVPRLA F+++ 
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKN 120

Query: 121 PDIDVRIKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLGNKPM 180
           PDIDVRIKAVD +EGSLTDDVDVAIYYG+GSWPGLRADKL  E LIP+CSP LL G+KP+
Sbjct: 121 PDIDVRIKAVDSEEGSLTDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPL 180

Query: 181 EKLSDLAYHTLLHDTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGN 240
           E  +DL +HTLLHD SR DW+ + ++ G+ +VNVN GPIFSHS++VLQAAAHGQGVALG 
Sbjct: 181 ETPADLKHHTLLHDMSRHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 241 NVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWML----KKARSE 295
           +VLA+P+I AGRL+ PF EVL++ +A+Y+VC +  A++G+I  FR+WML    +++RSE
Sbjct: 241 SVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWMLDMFAEESRSE 299