Pairwise Alignments

Query, 306 a.a., transcriptional regulator GcvA from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  430 bits (1106), Expect = e-125
 Identities = 212/299 (70%), Positives = 255/299 (85%), Gaps = 4/299 (1%)

Query: 1   MSRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSL 60
           MSRRLPPLN++K FEAAARHLSFTRAAEELFVTQAAVSHQIKALEE+LGLKLFRR+NRSL
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSL 60

Query: 61  LLTEEGQSYFLDIKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQE 120
           LLTEEGQ YFLDIKDIF  LA+ATD+LL RS  G+LT+S  PSFAIQWLVPRLA+F++  
Sbjct: 61  LLTEEGQGYFLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENN 120

Query: 121 PDIDVRIKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLGNKPM 180
           PDIDVRIKAVD +  SLTDDVDVAIYYG G+WPGLRADKL  E LIP+CSP LL G KP+
Sbjct: 121 PDIDVRIKAVDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPL 180

Query: 181 EKLSDLAYHTLLHDTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGN 240
            + SDL +HTLLHD+SR DW+ + ++ G++++NVN GPIFSHS++VLQAAAHGQGVALG 
Sbjct: 181 SQPSDLKHHTLLHDSSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 241 NVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWML----KKARSE 295
           +VLA+P+I AGRL+ PF EVL++ NA+Y+VC +  A++G+I  FR WML    +++RSE
Sbjct: 241 SVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQNHAEIGKIVAFRKWMLDMFEEESRSE 299