Pairwise Alignments

Query, 306 a.a., transcriptional regulator GcvA from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  432 bits (1112), Expect = e-126
 Identities = 211/299 (70%), Positives = 256/299 (85%), Gaps = 4/299 (1%)

Query: 1   MSRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSL 60
           MSRRLPPLN++K FEAAARHLSFTRAAEELFVTQAAVSHQIKALE+FLGLKLFRR+NRSL
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  LLTEEGQSYFLDIKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQE 120
           LLTEEGQSYFLDIKDIF+ LA+ATD+LL RS  G+LT+S+ PSFAIQWLVPRL+ F+++ 
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKN 120

Query: 121 PDIDVRIKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLGNKPM 180
           PDIDVRIKAVD +  SLTDDVDVAIYYG G+WPGLRADKL  E LIP+CSP LL G KP+
Sbjct: 121 PDIDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL 180

Query: 181 EKLSDLAYHTLLHDTSRKDWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVALGN 240
            K  DL YHTLLHD SR DW+ + ++ G+ ++NVN GPIFSHS++VLQAAAHGQGVALG 
Sbjct: 181 SKPEDLKYHTLLHDMSRHDWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 241 NVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWML----KKARSE 295
           +VLA+P+I AGRL+ PF EVL++ +A+Y+VC +  A++G++  FR+WML    +++RSE
Sbjct: 241 SVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWMLDMFAEESRSE 299