Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., flagellar motor protein MotB (RefSeq) from Shewanella amazonensis SB2B

 Score =  375 bits (962), Expect = e-108
 Identities = 183/305 (60%), Positives = 240/305 (78%), Gaps = 5/305 (1%)

Query: 6   QCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 65
           +C CPPPG P WL TFADLMSLLMCFFVLLL+FSEMDV+KFKQIAGSMK+AFGVQN++EV
Sbjct: 5   KCNCPPPGAPLWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQNKVEV 64

Query: 66  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLT 125
           KDIPKGTS+IA EFRPG+PEPTPI++I QQT ++T+  L+FQEGES+ AGG Q+  G   
Sbjct: 65  KDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPILDFQEGESESAGGVQQQQGSQR 124

Query: 126 GGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQI 185
           GG+++ T+ +  ++TQS+    Q + +++Q++ +AE     L+ EI  GAIE+E+LGQQI
Sbjct: 125 GGEASSTAQETAESTQSDSSSSQ-ELINQQVKKMAEQ----LNEEIVDGAIEIESLGQQI 179

Query: 186 DIRIREKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWD 245
            IRIREKGAF  GS FLQP+FRP++R + EL+KD+PG + V+G+TD+ ++ +ELY SNWD
Sbjct: 180 IIRIREKGAFGSGSGFLQPRFRPVIRAVGELLKDVPGIITVSGYTDDMQISNELYSSNWD 239

Query: 246 LSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISILQGDPV 305
           LS++RAVSVA E+ KVK FD  R++V G+    PL PN++   RA NRRVEI+I QG P 
Sbjct: 240 LSSKRAVSVAHELVKVKGFDSSRMKVVGMGSNNPLVPNESAENRARNRRVEIAIEQGKPK 299

Query: 306 YSDEV 310
            SDE+
Sbjct: 300 ESDEI 304