Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 76/320 (23%), Positives = 141/320 (44%), Gaps = 29/320 (9%)

Query: 16  AWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSII 75
           AW   +AD ++ +M FF+LL   +   V + + +  S  FA        V   P G   +
Sbjct: 22  AWKLAYADFVTAMMAFFLLLWLLN--SVTEEQLVGISNYFA-----PTAVSQSPSGAGGV 74

Query: 76  --AQEFRPGRPEPTPIDVIMQQTI----------DITQQTLEFQEGESD----RAGGNQR 119
              Q    G  +       +Q T+          D +         +SD    +  G   
Sbjct: 75  LGGQVLGEGASQSNSSSPAVQLTLPPPTIGAGGQDFSDANEGVDASDSDDDAGKGEGKGA 134

Query: 120 DSGQLTGGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVE 179
            +G L G         D Q   +E ++QQ +  ++    + ++I+   S +    ++ ++
Sbjct: 135 SAGDLEGLGKLGVEPTDKQLAAAEEKRQQ-EEFNKTATELRQAIQAVPSLQALSNSLLID 193

Query: 180 NLGQQIDIRIREK---GAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLD 236
           N  + + I++ ++     FP GS+ L P  R L+  +A+ V D+P K+ ++GHTD     
Sbjct: 194 NTPEGLRIQLIDREGLSMFPTGSSALLPHTRDLLALVAKAVADVPNKISISGHTDAPPYS 253

Query: 237 SELYRSNWDLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVE 296
                 NW+LSA RA++  + +      +    +V G A+T+PL  +D +A   +NRR+ 
Sbjct: 254 DPSGYGNWELSADRALASRRVLLANGLKEDRVDRVVGKAETEPLLADDPKA--PSNRRIA 311

Query: 297 ISILQGDPVYSDEVPSLGGG 316
           I++L+   +Y++     G G
Sbjct: 312 ITLLRDRSLYAEGAAGGGNG 331