Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., flagellar motor protein MotB from Rhodopseudomonas palustris CGA009

 Score =  100 bits (250), Expect = 3e-26
 Identities = 82/288 (28%), Positives = 130/288 (45%), Gaps = 37/288 (12%)

Query: 17  WLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDIPKGTSIIA 76
           W  TFADLM LLM FFV+L++FS  D  K   +AGSM+ AFGVQN      I +   +  
Sbjct: 16  WFVTFADLMGLLMSFFVMLVAFSTQDKAKLMIVAGSMREAFGVQNDARYSGIIENDGL-- 73

Query: 77  QEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLTGGQSAETSVQD 136
                    PT   V   + ++    T +   GE  R  G                 +  
Sbjct: 74  ---------PTRGKVKNTEHVNPELSTAKPSPGEVTRDEG-----------------INT 107

Query: 137 NQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQIDIRIREKGAFP 196
            ++ +  +     +   + M  ++E  K  +  E +QG + +E + Q        +  F 
Sbjct: 108 KEDREFALASASLRQALQNMPEISELSKNIMFEETKQG-LNLEIMDQD------GRSMFA 160

Query: 197 EGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWDLSAQRAVSVAQ 256
           +GS     + R L++++A  ++  P +V + GHT +  +      + WDLS+ RA SV Q
Sbjct: 161 DGSKVPFERTRLLLQRLAVPLRATPLRVTIVGHTSSGLMPERSDYNGWDLSSDRANSVRQ 220

Query: 257 EMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISILQGDP 304
            +E+          V G AD+QPL P+D     A NRRV I++++  P
Sbjct: 221 ILEREGLPGSHIFAVTGKADSQPLFPDDPSI--AANRRVTITLMRESP 266