Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., flagellar motor protein MotB (RefSeq) from Shewanella loihica PV-4

 Score =  378 bits (971), Expect = e-110
 Identities = 182/310 (58%), Positives = 239/310 (77%)

Query: 1   MDDEQQCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQ 60
           M  + +C CPP G P WL TFADLMSLLMCFFVLLL+FSEMDV+KFKQIAGSMK+AFGVQ
Sbjct: 1   MAKKVKCDCPPAGAPMWLATFADLMSLLMCFFVLLLAFSEMDVMKFKQIAGSMKYAFGVQ 60

Query: 61  NRLEVKDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRD 120
           N++EVKDIPKGTS+IA EFRPG+PEPTPI++I QQT ++T+ T+E Q GE D AGG Q+ 
Sbjct: 61  NKVEVKDIPKGTSVIALEFRPGKPEPTPIEIINQQTNEMTEPTIEVQAGEDDSAGGVQQQ 120

Query: 121 SGQLTGGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVEN 180
            G+  GG+++ T+ ++  +     QQQQ  A  +Q+    + + + L++EI  GAIE+E+
Sbjct: 121 RGEQRGGEASSTAQEEADSEAQAKQQQQEAASQDQINDRVKKMAQELNKEIVDGAIEIES 180

Query: 181 LGQQIDIRIREKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELY 240
           LGQQI IRIREKGAF  GS FLQP+F+P++R++ EL+KD+PG + V+GHTD+  + +ELY
Sbjct: 181 LGQQIIIRIREKGAFSSGSGFLQPRFKPVIRRVGELLKDVPGIITVSGHTDDMNISNELY 240

Query: 241 RSNWDLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISIL 300
            SNWDLS++RAV+VA E+ +V  FD  R++V G+A T PL PND+ A RA NRRVEI+I 
Sbjct: 241 SSNWDLSSKRAVAVAHELVRVPGFDQQRMKVVGMASTAPLVPNDSAANRARNRRVEIAIE 300

Query: 301 QGDPVYSDEV 310
           QG P  SDE+
Sbjct: 301 QGKPKESDEI 310