Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., chemotaxis motB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (336), Expect = 3e-36
 Identities = 96/303 (31%), Positives = 143/303 (47%), Gaps = 46/303 (15%)

Query: 10  PPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEVKDI- 68
           PP     WL ++AD M+LL   FV+L SF+  D  + K +   +  +      +    + 
Sbjct: 8   PPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVEGLIDSLSKIGLISTPAVN 67

Query: 69  ---PKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLT 125
              P GTSI+         EP  +       +D   + +E                   T
Sbjct: 68  ALAPGGTSIL---------EPNTV----TSAVDAEPKLIE-------------------T 95

Query: 126 GGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQI 185
              +  TS  +N  T ++         ++ +    E I   L  EIE   +E++ +   +
Sbjct: 96  ATTAPSTSESNNDLTNAK--------SNDTIRKYKEIISAKLKNEIENQEVEIDEVSDNL 147

Query: 186 DIRIREKGA-FPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNW 244
            IRI +    F  GSAF+QPKF PL+ +I E++  +PG+V + GHTD   L  E+Y  NW
Sbjct: 148 IIRIGDNNTFFASGSAFIQPKFIPLIDKIGEVIASVPGRVVIAGHTD-ATLPMEIYADNW 206

Query: 245 DLSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISILQGDP 304
           DLS+ RA +V + M K K  +  R+ V+GLADTQP   NDT   R  NRR+EI + QG+ 
Sbjct: 207 DLSSLRATAVVRIMTKNKGVNPSRIIVQGLADTQPRFQNDTPEHRQKNRRIEIILNQGNT 266

Query: 305 VYS 307
           V S
Sbjct: 267 VES 269