Pairwise Alignments

Query, 318 a.a., flagellar motor protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., sodium-driven polar flagellar protein PomB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  354 bits (908), Expect = e-102
 Identities = 171/305 (56%), Positives = 231/305 (75%), Gaps = 5/305 (1%)

Query: 6   QCKCPPPGLPAWLGTFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNRLEV 65
           +C CPPPG P WL TFADLMSLLMCFFVLLLSFSEMDV+K+KQIAGSMK+AFGVQN++EV
Sbjct: 3   KCNCPPPGAPLWLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVEV 62

Query: 66  KDIPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFQEGESDRAGGNQRDSGQLT 125
           KDIPKGTS+IA EFRPGRP+PTPI++I QQT ++T+  L+ Q GE D +GG Q+ +G   
Sbjct: 63  KDIPKGTSVIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQR 122

Query: 126 GGQSAETSVQDNQNTQSEMQQQQAQAMSEQMETVAESIKKALSREIEQGAIEVENLGQQI 185
           GG+++ T+ +     ++E     A A  +++    + + + L++EI  GAIE+E+LGQQI
Sbjct: 123 GGEASATAQETEDAVKAE-----AAAAQDKINQQVKKMAQELNQEIADGAIEIESLGQQI 177

Query: 186 DIRIREKGAFPEGSAFLQPKFRPLVRQIAELVKDIPGKVRVTGHTDNQKLDSELYRSNWD 245
            IRIREKG+F  GS FLQP+F+P+VR + EL+KD+PG + V+G+TD+ ++  ELY SNWD
Sbjct: 178 IIRIREKGSFASGSGFLQPRFKPVVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWD 237

Query: 246 LSAQRAVSVAQEMEKVKDFDHLRLQVRGLADTQPLGPNDTEAQRATNRRVEISILQGDPV 305
           LS++RAV+VA  + +VK FD  R++V G+A   P+ PND+   RA NRRVEI+I QG   
Sbjct: 238 LSSKRAVAVADVLLQVKGFDPKRMKVVGMASNNPIVPNDSPDNRARNRRVEIAIEQGKAK 297

Query: 306 YSDEV 310
            S+E+
Sbjct: 298 ESEEI 302