Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., Flagellar motor rotation protein MotA from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (337), Expect = 2e-36
 Identities = 76/247 (30%), Positives = 141/247 (57%), Gaps = 5/247 (2%)

Query: 1   MDLATLVGLIGGMAFVIMAMVL-GGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA 59
           MD+ +L+G++     +I    L GG +    +  + LIV+GG++   L++  M  F  A 
Sbjct: 1   MDVLSLIGIVMAFVAIIGGNYLEGGHLGALANGPAALIVLGGTIGAALLQSPMSAFKRAM 60

Query: 60  KIA-GKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEI--PNPFMQKGIDLLVDGH 116
           ++     F  + D     I ++V  +  ARK G L LE +    P+ + +KG+ LLVDG 
Sbjct: 61  QVLIWILFPPRVDLAGG-IDRVVNWSLTARKEGLLGLEGVADAEPDSYSRKGLQLLVDGA 119

Query: 117 DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIG 176
           + + +R+ L+ D    + R  +  +VF + G  AP +G+IG ++GL+ ++ N+ DP  +G
Sbjct: 120 EPEAIRSILEVDFYTQESRDIEAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQLG 179

Query: 177 PAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDS 236
             +AVA + T+YG   +N++  PIA KL     +++  R ++++G+L+I +G+NPR I+ 
Sbjct: 180 SGIAVAFVATIYGVASANLVLLPIAAKLKSIALRQSRYREMLLEGILSIAEGENPRSIEL 239

Query: 237 YLKNYLN 243
            L+ +++
Sbjct: 240 KLQGFMD 246