Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., Flagellar motor component from Pseudomonas stutzeri RCH2

 Score =  110 bits (274), Expect = 4e-29
 Identities = 72/252 (28%), Positives = 134/252 (53%), Gaps = 15/252 (5%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSI-MMFVDVVSVLIVVGGSVFVVLMKF---EMGQFF 56
           M+ +TL+G++  +  + + M+       +F+D+ S+ IV+ G++    + +   E+ + F
Sbjct: 1   MNPSTLIGILASIGLLAVVMLFAAKEPALFIDLPSLGIVLVGTLAATFISYPLREVTRVF 60

Query: 57  GA--AKIAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEME--IPNPFMQKGIDLL 112
           G     +  +    + D  E     +V ++     G  +A+E+ E  + NPF++ G+ L+
Sbjct: 61  GLLWTVLRNERLYTRQDLDE-----LVHISRLWISGDLVAVEKAEEKVSNPFLRTGVQLV 115

Query: 113 VDGHDADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNM--D 170
           +D    + +   LQ  I     R +   Q+FRA    APA GMIGTLVGL+ ++  +   
Sbjct: 116 IDNTPEEDILEVLQWRIARLRARENAEAQLFRAMASYAPAFGMIGTLVGLINLMFMLGSG 175

Query: 171 DPKSIGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQN 230
           D   IG ++A+AL+TT YG +L+N+I  P+A KL  R +Q      L+M G+  + + ++
Sbjct: 176 DMDLIGRSLAIALMTTFYGVLLANLILKPVAVKLERRTEQRVALMNLVMQGISMMCNRRS 235

Query: 231 PRVIDSYLKNYL 242
           P  +   LK+++
Sbjct: 236 PAYMRETLKSFI 247