Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., Flagellar motor component from Pseudomonas stutzeri RCH2

 Score =  145 bits (365), Expect = 1e-39
 Identities = 79/248 (31%), Positives = 145/248 (58%), Gaps = 7/248 (2%)

Query: 1   MDLATLVGLIGGMAFVIMA---MVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFG 57
           MD+ +L+GL+  +AFV +     + GG I   ++  + LIV+GG++  VL++  +  F  
Sbjct: 1   MDVLSLIGLL--LAFVAIVGGNFLEGGHISALLNGPAALIVLGGTLGAVLLQTPIAVFMR 58

Query: 58  AAKIAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEI--PNPFMQKGIDLLVDG 115
           A  I    F          I  +   ++ ARK G L LE +    P+P+ +KG+ LLVDG
Sbjct: 59  AMSIGRWIFFPPRIDLARGILMVTTWSNTARKEGLLGLEPVAETEPDPYARKGLQLLVDG 118

Query: 116 HDADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSI 175
            + +V+R+ L+ D+   + R  +  +V+ + G  +P +G+IG ++GL+ ++ N+ DP  +
Sbjct: 119 AEPEVIRSILEVDLYTQESRDLRAAKVYESMGGYSPTIGIIGAVMGLIHVMGNLADPSQL 178

Query: 176 GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVID 235
           G  +AVA + T+YG   +N++  PI +KL     ++T  R ++++GVL+I +G+NPR I+
Sbjct: 179 GSGIAVAFVATIYGVAFANLLVLPIGNKLKSVVQRQTAYREMLLEGVLSIAEGENPRSIE 238

Query: 236 SYLKNYLN 243
             L+ +++
Sbjct: 239 MKLQGFMD 246