Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., MotA/TolQ/ExbB proton channel from Pseudomonas syringae pv. syringae B728a

 Score =  141 bits (355), Expect = 1e-38
 Identities = 79/246 (32%), Positives = 143/246 (58%), Gaps = 5/246 (2%)

Query: 1   MDLATLVGLIGGMAFVIMAMVL-GGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA 59
           MD+ +L+GLI     +I    L GG +   ++  + LIV+GG++   L++  M  F  A 
Sbjct: 1   MDVLSLIGLILAFVAIIGGNFLEGGHLGALLNGPAALIVLGGTLGASLLQSPMSAFMRAM 60

Query: 60  KIAGKA-FMFKADAPEDLIAKIVEMADAARKGGFLALEEM--EIPNPFMQKGIDLLVDGH 116
           KI     F  + D P   + +++  +  ARK G L LE +    P+ + +KG+ LLVDG 
Sbjct: 61  KIIHWIIFPPRIDLPGG-VDRVIGWSMTARKEGLLGLETVADSEPDGYARKGLQLLVDGA 119

Query: 117 DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIG 176
           +   +R+ L+ D +  + R  +  +VF + G  AP +G+IG ++GL+ ++ N+ DP  +G
Sbjct: 120 EPAAIRSILEVDFITQETRDIQAAKVFESMGGYAPTVGIIGAVMGLIHVMGNLADPSQLG 179

Query: 177 PAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDS 236
             +AVA + T+YG  ++N+I  P+A+KL     ++   R ++++G+L+I +G+NPR I+ 
Sbjct: 180 SGIAVAFVATIYGVAMANLILLPVANKLKAIAHRQARYREMLLEGLLSIAEGENPRSIEL 239

Query: 237 YLKNYL 242
            L+ ++
Sbjct: 240 KLQGFM 245