Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella amazonensis SB2B

 Score =  363 bits (931), Expect = e-105
 Identities = 181/250 (72%), Positives = 208/250 (83%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLATL+GL+G  AFV+MAMV GG + +FVD+ SV IV GGS+FVV+MKF + QFFGA K
Sbjct: 1   MDLATLIGLLGAFAFVVMAMVTGGGLAIFVDIPSVFIVFGGSLFVVMMKFNLKQFFGAVK 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
           IA KAFMFK D PE+LI + V MADAARKGGFLALEE +I N FMQK +D+LVDGHD DV
Sbjct: 61  IAAKAFMFKIDKPEELIEQSVAMADAARKGGFLALEEAQISNSFMQKAVDMLVDGHDGDV 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           VR  L+KDI LT+ERH  G  +FRAFGDVAPAMGMIGTL+GLVAMLSNMDDPKSIGPAMA
Sbjct: 121 VREALEKDIALTEERHRTGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDDPKSIGPAMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VALLTTLYGA+L+NM+  P+ADKL+LR  +E LNR LIMD VLAIQDGQNPRVI+ +LKN
Sbjct: 181 VALLTTLYGAMLANMVAIPVADKLSLRMSEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN 240

Query: 241 YLNASKRILD 250
           YL    R +D
Sbjct: 241 YLAEKSRKID 250