Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., motA, chemotaxis (motility protein A (NCBI) from Rhodospirillum rubrum S1H

 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 56/264 (21%), Positives = 106/264 (40%), Gaps = 30/264 (11%)

Query: 14  AFVIMAMVLGG------SIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKIAG---K 64
           A +++A V+GG       + +       +I++G S+   L+        G  K  G   K
Sbjct: 7   AIIVIASVIGGYAAPGGHLAVLWQPFEFIIILGASLGAFLIGNPKTVLTGTLKSLGPMMK 66

Query: 65  AFMFKADAPEDLIAKIVEMADAARKGGFLALEE-MEIP--NPFMQKGIDLLVDGHDADVV 121
                  +  +L++ +  +   A+  G LALE  +E P  +P  QK      D H+ + +
Sbjct: 67  GPKHNKASYLELLSLLYTLFRLAKTKGDLALESHIEKPEDSPIFQKFPAFSKDHHNVEFL 126

Query: 122 RATLQKDIVLTDERHSKGTQVFRAF-----------------GDVAPAMGMIGTLVGLVA 164
              L+   + T+  H   T +                      D  PA+G++  ++G++ 
Sbjct: 127 CDYLRLLTLGTNNAHEVETIIEAEIESHHVEAHNIPSAMVNMADGMPALGIVAAVLGVIH 186

Query: 165 MLSNMDDPKSI-GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVL 223
            + ++ +P  + G  +  AL+ T  G +LS   F P    +    + +T     +  G+L
Sbjct: 187 TMGSITEPPEVLGHLIGAALVGTFMGVLLSYGFFAPFGRAIEAVFNNQTQYLHCMKSGIL 246

Query: 224 AIQDGQNPRVIDSYLKNYLNASKR 247
           A   G  P+V   + +  L  S R
Sbjct: 247 AHMQGYAPQVSIEFARKTLPPSVR 270