Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 266 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

 Score =  117 bits (293), Expect = 2e-31
 Identities = 73/255 (28%), Positives = 132/255 (51%), Gaps = 11/255 (4%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLG-GSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAA 59
           M LAT++G++ G     ++++L   + ++F+   S ++VVGG++    + FE      A 
Sbjct: 1   MSLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSAL 60

Query: 60  KIAGKAFMFKADAPEDL----IAKIVEMADAARKGGFLALE----EMEIPNPFMQKGIDL 111
           + +  A +F  +    +    + +++      +K G   LE    ++   + F+  G+DL
Sbjct: 61  R-SMVAILFNHEVSRSILTHEVGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDL 119

Query: 112 LVDGHDADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNM-D 170
           +V G+    VR  L   +  T +R     ++ R  G  APA GMIGTLVGL+ M  +M  
Sbjct: 120 VVTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPAFGMIGTLVGLIIMFDSMGS 179

Query: 171 DPKSIGPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQN 230
           +P S+G  +AVAL  TLYG + + ++F P A K+  R +       L+ +G+  + + ++
Sbjct: 180 NPGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKS 239

Query: 231 PRVIDSYLKNYLNAS 245
           PR I   + +YL+ S
Sbjct: 240 PRYIQDRMNSYLDPS 254