Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

 Score =  181 bits (460), Expect = 1e-50
 Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 4/251 (1%)

Query: 2   DLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKI 61
           DLAT+ G+ G +A ++ A+VLGGS   F D+ S+LIVV G++ V +  F +        +
Sbjct: 18  DLATVAGIGGALALIVTALVLGGSPRAFFDLPSILIVVLGTLAVTVASFTVKDIGVTVAM 77

Query: 62  AGKAFMFKADAPEDLIAKIVEMADAARKGGFLALE----EMEIPNPFMQKGIDLLVDGHD 117
              A       P     KI+ +AD  RK G L ++    E     PF+ KG+ L+VDG  
Sbjct: 78  LRPALTQSTRPPRAAALKILALADFCRKSGILKIQGPILESLRDEPFLHKGMGLVVDGLP 137

Query: 118 ADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGP 177
              V A L +DI  T +R ++ T V R   +VAPAMG+IGTL+GLV ML N+++P  IGP
Sbjct: 138 EPDVEAILAQDIHATQQRLARATSVLRRAAEVAPAMGLIGTLIGLVQMLGNLNNPAVIGP 197

Query: 178 AMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSY 237
           +MAVALLTT YGA++ N++F P+A KL      +TL RR+ + G+L++   +NPR ++  
Sbjct: 198 SMAVALLTTFYGAIMGNVVFLPLAGKLERNGADDTLVRRIYLVGILSVARKENPRRLEML 257

Query: 238 LKNYLNASKRI 248
           L + L  ++R+
Sbjct: 258 LNSALPPAQRV 268



 Score = 23.5 bits (49), Expect = 0.005
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 131 LTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIG--PAMAVALLTTLY 188
           + D R  +G    R   D+A   G+ G L  +V  L     P++    P++ + +L TL 
Sbjct: 1   MADSRDIEGPGPSRKLPDLATVAGIGGALALIVTALVLGGSPRAFFDLPSILIVVLGTLA 60

Query: 189 GAVLS 193
             V S
Sbjct: 61  VTVAS 65