Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., MotA/TolQ/ExbB proton channel family protein from Rhodopseudomonas palustris CGA009

 Score =  197 bits (501), Expect = 2e-55
 Identities = 98/248 (39%), Positives = 155/248 (62%), Gaps = 1/248 (0%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MD+ T  GL+GG+A + + M++GG + MF+   +++I+ GGS+   +++F +        
Sbjct: 1   MDIMTSAGLVGGIAVIAVMMLMGGDVHMFISEHAMIIIFGGSLTATMIRFPLNVMLHGLP 60

Query: 61  IAGK-AFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDAD 119
           +  K AF     +  DL+ ++  +A+ ARK G + LE++E  +PF+ KGI  + DG+D +
Sbjct: 61  LGAKFAFTMSRLSARDLVDELASIAEIARKSGPVGLEKVEAEDPFLAKGIRYVADGYDIE 120

Query: 120 VVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAM 179
            +R  L++D         +G++++RA GD APA GMIGTL+G+V M SNM DP  +GP M
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFSNMSDPSKLGPFM 180

Query: 180 AVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLK 239
           A ALL TLYGA+++N+   PIADKL  ++  E  NR LI+DG+L I+D ++P ++   L 
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHTKKIDEETNRTLIIDGILMIRDSKSPALVREMLL 240

Query: 240 NYLNASKR 247
            YL    R
Sbjct: 241 AYLPEKHR 248