Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella loihica PV-4

 Score =  352 bits (902), Expect = e-102
 Identities = 178/250 (71%), Positives = 206/250 (82%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLATL+GLIG   F+I AMV  G I +FVDV SVLIV+ GS+FVV+MKF + QF GA K
Sbjct: 1   MDLATLIGLIGAFGFIIGAMVSSGGIAIFVDVPSVLIVMIGSLFVVMMKFNLKQFLGAVK 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
           IA KAFMFK D P++LI + V MADAARKGGFLALEE EI N FMQK +D+LVDGHD +V
Sbjct: 61  IAAKAFMFKIDKPDELIEQSVTMADAARKGGFLALEEAEISNSFMQKAVDMLVDGHDGEV 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           VR  L+KDI LT+ERH  G  +F+A GDVAPAMGMIGTL+GLVAMLSNMDDPKSIGPAMA
Sbjct: 121 VREALEKDIALTEERHKTGISIFKALGDVAPAMGMIGTLIGLVAMLSNMDDPKSIGPAMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VALLTTLYGA+++NMI  PIADKL+LR  +E LNR LIMD VLAIQDGQNPRVI+ +LKN
Sbjct: 181 VALLTTLYGAIIANMIALPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN 240

Query: 241 YLNASKRILD 250
           YL+  +R +D
Sbjct: 241 YLSEKQREID 250