Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  189 bits (481), Expect = 4e-53
 Identities = 96/243 (39%), Positives = 152/243 (62%), Gaps = 2/243 (0%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLAT++G++     +  A+ +GG+ + FVD  ++LIV+GG++   L+ + +        
Sbjct: 1   MDLATVLGILISFGLIGTALSMGGNPLFFVDSAALLIVLGGTLGAALVHYPLPVALRVLS 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEM--EIPNPFMQKGIDLLVDGHDA 118
           I  KAF  +    + +I + +E A  AR+ G L+LE     + +PF++KG+ L +DG + 
Sbjct: 61  ITRKAFATRLHRIDLVIDQFMEFAHRARREGLLSLEPAVRNLDDPFLRKGLQLTIDGLEP 120

Query: 119 DVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPA 178
           D +R  ++ +I   + RHS G  +F A    APA+G++GTL+GLV ML +M+DP +IGPA
Sbjct: 121 DAIREIMESEIAALETRHSMGVDIFNALASYAPALGLVGTLIGLVQMLRSMNDPSAIGPA 180

Query: 179 MAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYL 238
           MAVAL+TT YG VL+N++F P+A KL  R  +E     + ++G+LAI  G+NPR+I   L
Sbjct: 181 MAVALITTFYGVVLANLVFLPLAGKLRHRSKEEVQLMEMQLEGILAIARGENPRIILEKL 240

Query: 239 KNY 241
             Y
Sbjct: 241 SCY 243