Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  183 bits (464), Expect = 3e-51
 Identities = 96/247 (38%), Positives = 147/247 (59%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MD+AT  G++ G   VI A+++G     F D+ SV+IV GG+   +L+ F + +   A +
Sbjct: 1   MDIATFFGVLTGFGLVISAILMGPEPGKFFDIASVMIVFGGTAASILVTFPLEEVMQAVR 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
              KAF  K    +D++  +V +A+ +R+ G +ALE ++  N  ++K   L+ D  D  +
Sbjct: 61  GGCKAFGSKRVQAQDVVNTMVRIAEISRREGLIALENVQTENALIKKACQLIADNADPGL 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           +R T+  +I     RH+    VF      +PA GMIGTL+GLV ML+ ++DP SIGPAMA
Sbjct: 121 IRGTVAIEIASMKRRHNVSIGVFNRLAGYSPAYGMIGTLIGLVQMLATLNDPSSIGPAMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VA++TT YGA+LSN++F PIA KL  R  QE L+  +I +G   I    NPR++   L +
Sbjct: 181 VAIITTFYGALLSNLLFLPIAGKLKARSMQEELHLLVIFEGAKCILKNNNPRLVYEKLSS 240

Query: 241 YLNASKR 247
           +L   +R
Sbjct: 241 FLPPKER 247