Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., MotA/TolQ/ExbB proton channel from Marinobacter adhaerens HP15

 Score =  194 bits (494), Expect = 1e-54
 Identities = 101/239 (42%), Positives = 151/239 (63%), Gaps = 1/239 (0%)

Query: 10  IGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKIA-GKAFMF 68
           + G+  VIMAM+   S + F+++  + IV+GG+  V L+KF M     A ++A   AF  
Sbjct: 1   MAGVLIVIMAMLANASFLTFLNLPGLAIVLGGTFAVTLIKFRMASVMSAFRLAMSAAFTD 60

Query: 69  KADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADVVRATLQKD 128
           +   P +LI ++  +A   RK G L LE  +  N F+QK I+L VDGH  ++V   L ++
Sbjct: 61  RMARPTELIREVGSLAMVVRKEGILGLENHQTDNEFLQKAINLCVDGHPPELVEEALAQE 120

Query: 129 IVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMAVALLTTLY 188
              T ER+    +VFR  G+ APA+GM+GTLVGLV ML+ +DDP SIGPAMA+ALLTTLY
Sbjct: 121 TQQTAERYEVAERVFRGIGESAPAIGMLGTLVGLVQMLNTLDDPSSIGPAMAIALLTTLY 180

Query: 189 GAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKNYLNASKR 247
           GA ++ ++  P+ADKL L+ + E  N+ LI+  +  I  G+NPRV+   L ++++  +R
Sbjct: 181 GAFIAQLVALPLADKLQLKAEDEARNQVLIITSIKNIMRGENPRVMTELLSSFVHPEQR 239