Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  131 bits (329), Expect = 1e-35
 Identities = 70/242 (28%), Positives = 133/242 (54%), Gaps = 5/242 (2%)

Query: 5   TLVGLIGGMAFVIMA-MVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK-IA 62
           + +G+I  + F+++  ++ GG     +D+ + +IV+GG++   + +F       + K   
Sbjct: 2   SFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFK 61

Query: 63  GKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEM--EIPNPFMQKGIDLLVDGHDADV 120
              F  + D  E     ++E+A   RKGG L++E+   +I +PF+ KG++LLVDG++ D 
Sbjct: 62  WLIFPLRTDLNERA-EFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDN 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           +   L+K+I        +  +V+ A G   P MG++G + GL+  +  +D P  +G A+A
Sbjct: 121 IVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAIA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VA + T+YG   +N+IF P  ++      Q +L + + + G+  I DG++P+ + + L  
Sbjct: 181 VAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQLNP 240

Query: 241 YL 242
           YL
Sbjct: 241 YL 242