Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  348 bits (893), Expect = e-101
 Identities = 173/250 (69%), Positives = 204/250 (81%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLAT++GL+G   F+I +MV+ G +MMF D+ SV+IV GGS FVV+MKF + QF GA K
Sbjct: 1   MDLATIIGLVGSFGFIIWSMVISGGVMMFYDLASVVIVFGGSFFVVMMKFNLKQFLGAVK 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
           IA KAF+FK D PEDLI + V MADAARKGGFLALEE +I N FMQK +D+LVDGHD +V
Sbjct: 61  IAAKAFIFKIDRPEDLIEQSVTMADAARKGGFLALEEAQISNSFMQKAVDMLVDGHDGEV 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           VRA L+KDI LT++RH  G  +FRAF DV PAMGMIGTLVGLVAML+NM DPKSIGP+MA
Sbjct: 121 VRAALEKDITLTEDRHRIGIAIFRAFADVGPAMGMIGTLVGLVAMLANMSDPKSIGPSMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VALLTTLYGAVL+NM+  PIADKL+LR  +E LNR LIMD VLAIQDGQNPRVI+ +LKN
Sbjct: 181 VALLTTLYGAVLANMVCIPIADKLSLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN 240

Query: 241 YLNASKRILD 250
           YL   +R +D
Sbjct: 241 YLAEKQRKID 250