Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., chemotaxis protein PomA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  226 bits (575), Expect = 5e-64
 Identities = 114/247 (46%), Positives = 166/247 (67%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MD+ATL+G++GG A +I+A++LGGS+M FVD+ SV+IV+GG++  +L+ F +    G+  
Sbjct: 1   MDIATLIGIVGGFALIIIAILLGGSLMPFVDIPSVVIVIGGTITAILVMFPLEVVLGSMG 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
           IA + F F  + P   +  I ++AD AR+   +ALE++ + + F++KGI ++ DG   D 
Sbjct: 61  IAMRTFKFNKENPVQTVEDICKLADTARRESLVALEKVPLQDEFLKKGIRMVADGSSQDQ 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           V A L  +I    +RH +G  VF+  G  APA GMIGTLVGLV ML N+ DP SIGPAMA
Sbjct: 121 VTALLDAEINFMKQRHRRGQAVFKGLGSAAPAFGMIGTLVGLVNMLQNLSDPASIGPAMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VALLTT YGAVLSN++F P+A KL  R   E    +L M+GVL+I +G++P+++   L  
Sbjct: 181 VALLTTFYGAVLSNLMFLPMAKKLEERSFDEQFMMQLKMEGVLSILNGEHPQLVKEKLMA 240

Query: 241 YLNASKR 247
           +L  + R
Sbjct: 241 FLPPNLR 247