Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 252 a.a., chemotaxis protein MotA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  194 bits (494), Expect = 1e-54
 Identities = 98/249 (39%), Positives = 159/249 (63%), Gaps = 2/249 (0%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLATL+GL      + +A++LGG  ++F D+ ++LIV+GG++   L+ + + +      
Sbjct: 1   MDLATLIGLAVSFGLIALALLLGGDPLLFADLPALLIVLGGTIGATLVNYPIDEALRMLA 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEM--EIPNPFMQKGIDLLVDGHDA 118
           IA  AF     + E+++ + +++++ AR+ G LALE     +P+PFM+KG+ L VDG + 
Sbjct: 61  IARHAFKGHQTSSEEVLNQFLDLSNRARREGLLALEPAVRTLPDPFMRKGLQLTVDGLEP 120

Query: 119 DVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPA 178
           + +   L+ ++   + RH  G  +F A G  APA+G+IGT++GLV ML  M+DP +IGPA
Sbjct: 121 EAIEDILRCEMENMETRHESGAAIFAAMGTYAPALGLIGTVIGLVQMLKRMNDPSTIGPA 180

Query: 179 MAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYL 238
           M+VAL+TT YGAVL+N++F P+  KL  R  QE     + + G+LAI  G+NPR+I   L
Sbjct: 181 MSVALITTFYGAVLANLVFLPLVGKLRHRSRQEIQLMEMQLAGILAIARGENPRIIREKL 240

Query: 239 KNYLNASKR 247
            ++   ++R
Sbjct: 241 VSFQTPAER 249