Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., chemotaxis protein MotA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  192 bits (487), Expect = 7e-54
 Identities = 99/247 (40%), Positives = 153/247 (61%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MD+AT VG+I G   VI A+++G +   F+D+ S +IV GG+   +L+ F + + + A +
Sbjct: 1   MDIATFVGVIIGFGLVIGAILMGAAPGKFIDLPSAMIVFGGTFASILVTFPLEEVWQAVR 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
              KAF  +     D+++ +V +A+ +R+ G +ALE ++  NP ++K   L+ D  D  +
Sbjct: 61  GGLKAFGSRKVEARDIVSTMVRIAEISRREGIIALENVQTENPLIKKACQLIADNADPTL 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           +R T+  +I     RH+    VF   G  APA GMIGTL+GLV ML+ +DDP +IGPAMA
Sbjct: 121 IRTTVAIEISAMKRRHNISISVFNRLGGFAPAFGMIGTLIGLVQMLATLDDPTTIGPAMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VA++TT YGA+LSN++F PIA KL  R  QE L+  +I +G  +I +  NPR++   L +
Sbjct: 181 VAIITTFYGALLSNLVFLPIAGKLKARSMQEELHLLIIFEGAKSILENNNPRLVYEKLSS 240

Query: 241 YLNASKR 247
           +L    R
Sbjct: 241 FLPPKDR 247