Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., flagellar motor protein MotA from Burkholderia phytofirmans PsJN

 Score = 62.8 bits (151), Expect = 8e-15
 Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 32/270 (11%)

Query: 3   LATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAKIA 62
           L TL+ + GG A        GG +   +  V VL++VG  V   ++   M       ++ 
Sbjct: 8   LVTLLSVFGGYALE------GGHLGALLQPVEVLMIVGAGVGAFILGNGMKTIKATLRVI 61

Query: 63  GKAFM---FKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNP---------------- 103
              F    +  D   +L+A +  +   ARK G L LE  +I +P                
Sbjct: 62  PTLFKGAKYNKDVYMELMALLYVLLAKARKEGTLTLEA-DIDDPSKSPIFTQYPKILADH 120

Query: 104 ----FMQKGIDLLVDGH-DADVVRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGT 158
               F+   + L+V G+ +A  + + + ++I    +            GD  PA G++  
Sbjct: 121 HIIEFLTDYLRLMVGGNMNAFEIESLMDEEIETHHQEGEAPAHALNKVGDAMPAFGIVAA 180

Query: 159 LVGLVAMLSNMDDPKSI-GPAMAVALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRL 217
           ++G+V  +++ D P ++ G  +A AL+ T  G +LS  +  P+A     R  + T   + 
Sbjct: 181 VMGVVHTMASADKPPAVLGEMIAQALVGTFLGILLSYGLIGPLASVAEQRVTESTKMFQC 240

Query: 218 IMDGVLAIQDGQNPRVIDSYLKNYLNASKR 247
           I   +LA  +G  P +   + +  L +++R
Sbjct: 241 IKVTILASLNGYAPAIAVEFGRKVLFSTER 270