Pairwise Alignments

Query, 254 a.a., flagellar motor protein PomA from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella sp. ANA-3

 Score =  350 bits (898), Expect = e-101
 Identities = 175/250 (70%), Positives = 203/250 (81%)

Query: 1   MDLATLVGLIGGMAFVIMAMVLGGSIMMFVDVVSVLIVVGGSVFVVLMKFEMGQFFGAAK 60
           MDLAT++GL+GG  F++ AM+  G + +F+DV SV IV GGS FVV+MKF + QF GA K
Sbjct: 1   MDLATVIGLVGGFGFILWAMMTSGGLAIFIDVPSVFIVFGGSFFVVMMKFNLKQFLGAVK 60

Query: 61  IAGKAFMFKADAPEDLIAKIVEMADAARKGGFLALEEMEIPNPFMQKGIDLLVDGHDADV 120
           IA KAFMFK D PEDLI + V MADAARKGGFLALEE +I N FMQK +D+LVDGHD +V
Sbjct: 61  IAVKAFMFKIDKPEDLIEQSVTMADAARKGGFLALEEAQISNSFMQKAVDMLVDGHDGEV 120

Query: 121 VRATLQKDIVLTDERHSKGTQVFRAFGDVAPAMGMIGTLVGLVAMLSNMDDPKSIGPAMA 180
           VRA L+KDI LT+ERH  G  +FRAFGDV PAMGMIGTLVGLVAMLSNM DPKSIGP+MA
Sbjct: 121 VRAALEKDIALTEERHRNGIAIFRAFGDVGPAMGMIGTLVGLVAMLSNMSDPKSIGPSMA 180

Query: 181 VALLTTLYGAVLSNMIFFPIADKLALRRDQETLNRRLIMDGVLAIQDGQNPRVIDSYLKN 240
           VALLTTLYGAV++NM+  PIADKL LR  +E LNR LIMD VLAIQDGQNPRVI+ +LKN
Sbjct: 181 VALLTTLYGAVVANMVCIPIADKLTLRMGEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN 240

Query: 241 YLNASKRILD 250
           YL   +R +D
Sbjct: 241 YLAEKQRKID 250