Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., octaprenyl-diphosphate synthase IspB from Phaeobacter inhibens DSM 17395

 Score =  103 bits (258), Expect = 4e-27
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 21/231 (9%)

Query: 22  RIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIH 81
           RIP  T  L+EA       GGKR RP L     ++ G    +    A+ VE IH  +L+H
Sbjct: 39  RIPEVTAHLVEA-------GGKRLRPMLTLAAARLCGYSGDNHVKLAATVEFIHTATLLH 91

Query: 82  DDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQ 141
           DD+  +D+   RRG+PT ++ +D  +++L GD L   +F ++ E        T  + +L 
Sbjct: 92  DDV--VDESGQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMVE--------TGSLRVLD 141

Query: 142 ALAEASGAQGMCLGQALDLAAENRLISLEELET-IHRNKTGALMRCAIRLGALAAGEKGR 200
            LA AS    +  G+ L + A + L + E +   + R KT AL   A + G + A     
Sbjct: 142 ILANASAT--IAEGEVLQMTAASDLATDEGIYLQVVRGKTAALFSAATQAGGVVANAP-E 198

Query: 201 AMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPAL 251
             +  L  Y +A+G+AFQ+ DD+LD   D+   GK  G D    K T P +
Sbjct: 199 TQIDALFAYGDALGIAFQIADDLLDYQGDSAATGKNVGDDFRERKLTLPVI 249