Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., polyprenyl synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (826), Expect = 5e-93
 Identities = 172/293 (58%), Positives = 220/293 (75%), Gaps = 6/293 (2%)

Query: 3   EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELS 62
           EA++ YQQR + QL  ++N        L  AM +G L+GGKR RP+LVY  G+MLG  L 
Sbjct: 4   EAITRYQQRVDGQLRHFINAQDDTEPQLKAAMEHGALIGGKRIRPFLVYAVGEMLGVPLE 63

Query: 63  DLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTI 122
            LD  A+A+ECIHAYSLIHDDLPAMDDD LRRG+PT HI F+EATAIL GDALQTLAF I
Sbjct: 64  RLDACAAAIECIHAYSLIHDDLPAMDDDALRRGQPTVHIAFNEATAILAGDALQTLAFEI 123

Query: 123 LAE--GDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKT 180
           +++  G+LSA   +Q++AM++ALA+ASG  GMC GQA+DL A +R I LE L+ +HR KT
Sbjct: 124 ISQEGGELSA---SQQLAMVRALAKASGYSGMCGGQAMDLNATDRQIDLETLKRLHRLKT 180

Query: 181 GALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSD 240
           GAL+RCA+ L  +AA +       HL  +A+A+GLAFQVQDD+LDII+ TE LGKPQGSD
Sbjct: 181 GALIRCAVELPIIAA-KVTDEQASHLLTFADAIGLAFQVQDDVLDIIASTEELGKPQGSD 239

Query: 241 QELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYNTEHLEEFARYVVERK 293
            E NKSTYP LLGL GAQ  A +L+++AL AL  +PYN++ + EFAR+++ER+
Sbjct: 240 CESNKSTYPKLLGLSGAQATAKSLIEDALSALAKLPYNSQLIAEFARFIIERR 292