Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Polyprenyl synthetase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  200 bits (509), Expect = 3e-56
 Identities = 125/277 (45%), Positives = 161/277 (58%), Gaps = 20/277 (7%)

Query: 33  AMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDEL 92
           +M Y L  GGKR RP L   T  + G     +   A+A+E IH YSLIHDDLPAMDDD+L
Sbjct: 38  SMEYSLNAGGKRVRPVLCLTTAALFGLPTERVMPFAAAIEMIHTYSLIHDDLPAMDDDDL 97

Query: 93  RRGKPTCHIQFDEATAILTGDALQTLAFTILA---EGDLSAAGE----------TQRVAM 139
           RRGKP+ H  FDEATAIL GD L T AF  +A    G  +AAG+             +A 
Sbjct: 98  RRGKPSNHKMFDEATAILAGDGLLTDAFDFMAGVGAGVGAAAGDENGGNAAIPAANVLAA 157

Query: 140 LQALAEASGAQGMCLGQALDLAAENRL-ISLEELETIHRNKTGALMRCAIRLGALAAGEK 198
           L+A+A A+GA GM  GQALD+    R  ++LEE+  +H  KTGAL+R +   GAL AG  
Sbjct: 158 LRAVARAAGAPGMVGGQALDMEYTGRTGVTLEEMAAMHAMKTGALLRASCLSGALLAGAD 217

Query: 199 GRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQ 258
             A L  +  Y   +G AFQ+ DDILD + D   +GKP GSD E  K+TYP+LLG+E ++
Sbjct: 218 ADA-LARIADYGAHIGAAFQIVDDILDEVGDEAEIGKPVGSDAEQGKTTYPSLLGVERSR 276

Query: 259 QKAHTLLQEALLALEAIPY---NTEHLEEFARYVVER 292
             A      A+  L   PY   + + L   A Y+V+R
Sbjct: 277 ALARERADAAIERLS--PYTGPDADFLRSLASYIVDR 311