Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., polyprenyl synthetase family protein from Methanococcus maripaludis JJ

 Score =  144 bits (363), Expect = 3e-39
 Identities = 94/256 (36%), Positives = 139/256 (54%), Gaps = 16/256 (6%)

Query: 15  QLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECI 74
           ++D  L +   +   L  A ++ LL GGKR RPYL  +T  +   +L+++  PA +VE I
Sbjct: 10  KIDSELKKYMEKDTKLYGASKHLLLAGGKRVRPYLSILTYLLKKDDLTEIMAPALSVELI 69

Query: 75  HAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGET 134
           H Y+L+HDD+  MD+D+ RRG PT H  + E  AIL GD L   AF  L+  + S     
Sbjct: 70  HNYTLVHDDI--MDNDDQRRGIPTVHTVYGEPIAILAGDLLYAKAFEALSNIEDSKKAHE 127

Query: 135 QRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALA 194
               + +A  E      +C GQ  D+  E R  +L+E   +   KTGAL+   + +GA+ 
Sbjct: 128 VLKVLSKACVE------VCEGQTEDMEFEERFPTLDEYLEMISKKTGALIVAPVEIGAVM 181

Query: 195 AG---EKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPAL 251
           A    E+  A    L  YA+ +G+ FQ+QDD+LD+I D +T+GKP GSD    K T   +
Sbjct: 182 ADCTPEEREA----LCNYAKRIGMTFQIQDDVLDLIGDQKTIGKPVGSDIVEGKKTMMVI 237

Query: 252 LGLEG-AQQKAHTLLQ 266
             +E  ++ K   LLQ
Sbjct: 238 HAMENLSEDKKERLLQ 253