Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., geranylgeranyl diphosphate synthase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  201 bits (511), Expect = 2e-56
 Identities = 125/266 (46%), Positives = 158/266 (59%), Gaps = 6/266 (2%)

Query: 30  LIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDD 89
           L  AM Y LL GGKR RP L   T  M G +   +   A+A+E IH YSLIHDDLPAMDD
Sbjct: 23  LQSAMEYSLLAGGKRLRPVLCLSTAGMTGLDPMSVMPFAAAIELIHTYSLIHDDLPAMDD 82

Query: 90  DELRRGKPTCHIQFDEATAILTGDALQTLAFTILAE-GDLSAAGETQRVAMLQALAEASG 148
           D+LRRG+P+ H QFDEATAIL GD L T AF ++A  G    AG    +A L+ ++ A+G
Sbjct: 83  DDLRRGRPSNHRQFDEATAILAGDGLLTDAFDLMASVGGGIPAGHV--LAALREVSSAAG 140

Query: 149 AQGMCLGQALDLAAENR-LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLD 207
           + GM  GQALD+    R  I L  L T+H  KTGAL+RC+   GAL  G    A +  + 
Sbjct: 141 SSGMVGGQALDMDYTGRDDIDLAALRTMHAMKTGALIRCSCVAGALLGGAPASA-VEQVA 199

Query: 208 RYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQE 267
            Y  A+G AFQ+ DDILD   D   LGKP GSD E  K TYP+LLG+E ++  A      
Sbjct: 200 GYGAAIGAAFQIVDDILDETGDEAQLGKPVGSDVEQGKVTYPSLLGIERSRALAQEQADI 259

Query: 268 ALLALEAIP-YNTEHLEEFARYVVER 292
           A+  L      + + L   A+Y+V+R
Sbjct: 260 AVTCLADFEGEDADFLRALAQYIVDR 285