Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., putative isoprenyl synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  132 bits (333), Expect = 8e-36
 Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 13/246 (5%)

Query: 15  QLDQWLNRIPFQTLP--LIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVE 72
           +++  L+ I     P  L E + Y L LGGKR RP L+ +   +   ++S +  PA+ +E
Sbjct: 10  KINNHLSEIQITRTPEGLYEPIEYILSLGGKRIRPVLMLMAYNLYKEDVSSIYDPATGIE 69

Query: 73  CIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAG 132
             H ++L+HDDL  MD  ++RRGKPT H  +++ TAIL+GD +  LAF  +A        
Sbjct: 70  VYHNHTLLHDDL--MDRSDMRRGKPTVHKVWNDNTAILSGDTMLILAFRYVAGCAPEHLK 127

Query: 133 ETQRVAMLQALAEASGAQGMCLGQALDLAAENRL-ISLEELETIHRNKTGALMRCAIRLG 191
           E   +  L AL        +C GQ LD+  E+R  ++ +E   + R KT  L+  ++++G
Sbjct: 128 EVIDLFSLTALE-------ICEGQQLDMEFESRNDVAEDEYIEMIRLKTAVLLAASLKIG 180

Query: 192 ALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPAL 251
           A+ AG    A   +L  +   +G+AFQ+QDD+LD+  D E  GK  G D   NK TY  +
Sbjct: 181 AILAGASA-ADAENLYNFGMQIGVAFQLQDDLLDVYGDPEVFGKKIGGDILCNKKTYMLI 239

Query: 252 LGLEGA 257
             LE A
Sbjct: 240 KALERA 245