Pairwise Alignments

Query, 294 a.a., (2E,6E)-farnesyl diphosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., polyprenyl synthetase (RefSeq) from Shewanella sp. ANA-3

 Score = 94.0 bits (232), Expect = 4e-24
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 16/231 (6%)

Query: 41  GGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCH 100
           GGKR RP L  +  + +  +       A+ +E IH  SL+HDD+  +D+  LRRG+ T +
Sbjct: 51  GGKRLRPLLSVLAARAVDYQGEAHLKLAAIIEFIHTASLLHDDV--VDESTLRRGRETAN 108

Query: 101 IQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDL 160
             F  + ++L GD L T +F ++ E D         + +L+ LA+ +    +  G+ L L
Sbjct: 109 ALFGNSASVLVGDFLYTRSFQMMTELD--------SMRVLRVLADTTNV--LAEGEVLQL 158

Query: 161 AAENRLISLEE--LETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQ 218
              N   + EE  +  I+  KT  L   A  L A+ AG         L  Y + +G AFQ
Sbjct: 159 MNCNDPNTTEESYMRVIYC-KTAKLFEAATLLAAVLAGATPEQEAA-LGDYGKYLGTAFQ 216

Query: 219 VQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEAL 269
           + DD+LD  +D+E LGK  G D    K T P +  +    ++   L+++A+
Sbjct: 217 LTDDLLDYTADSEELGKNIGDDLAEGKPTLPLIYAIAHGTEEEQQLIRQAI 267