Pairwise Alignments

Query, 626 a.a., 1-deoxy-D-xylulose-5-phosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., deoxyxylulose-5-phosphate synthase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  900 bits (2327), Expect = 0.0
 Identities = 446/626 (71%), Positives = 515/626 (82%), Gaps = 6/626 (0%)

Query: 1   MTLDISKYPTLALANTPDELRSLPKEVLPKLCDELRTYLLNSVSQSSGHLASGLGTVELT 60
           M+LDIS++P LA ANTP+ELR LP+ +LP+L DELR +LL SV  SSGH ASGLGTVELT
Sbjct: 1   MSLDISQFPVLAQANTPNELRQLPQALLPQLADELREFLLKSVGMSSGHFASGLGTVELT 60

Query: 61  VALHYVYHTPFDHLIWDVGHQAYPHKILTGRRDQMPTIRQKDGLHPFPWREESEYDTLSV 120
           VALHYVY+TPFD LIWDVGHQAYPHKILTGRRD+M TIRQK+GLHPFPWREESEYDT SV
Sbjct: 61  VALHYVYNTPFDRLIWDVGHQAYPHKILTGRRDRMHTIRQKNGLHPFPWREESEYDTFSV 120

Query: 121 GHSSTSISAALGMAICAGKEGKDRKVVSVIGDGAITAGMAFEAMNHAGDVHPDMLVVLND 180
           GHS TSISAAL MA+ A KE   RKVV+VIGDGA+T GM FEAMNHAGD+H DML+VLND
Sbjct: 121 GHSGTSISAALAMAVAAEKEQAGRKVVAVIGDGAMTGGMVFEAMNHAGDLHNDMLMVLND 180

Query: 181 NEMSISENVGALNNHLAQVLSGSLYTSIREGGKKVLSGIPPIKELVRRTEEHLKGMVVPG 240
           NEMSISENVGALNNHLAQ++SG  YT+IRE  KKVL G+P IKE+ +RTEEHLKGMVVPG
Sbjct: 181 NEMSISENVGALNNHLAQLMSGRFYTTIRESSKKVLKGMPVIKEMAKRTEEHLKGMVVPG 240

Query: 241 TLFEELGFNYIGPVDGHDVLELIKTLKNMRELKGPQFLHVMTKKGKGYAPAEKDPIGYHG 300
           TLFEELGFNYIGP+DGHDV  L++TL+NMR LKGPQ LH+MTKKG+GY PAEKDPIG+H 
Sbjct: 241 TLFEELGFNYIGPIDGHDVDALVETLRNMRNLKGPQVLHIMTKKGRGYEPAEKDPIGWHA 300

Query: 301 VPKFDPSHHSLPKSSNTKPTFSKIFGDFLCDMAAQDPKLMAITPAMREGSGMVRFSKEYP 360
           VPKFDPS    P +    PTFS++FG +LCD+A QD K++ ITPAMREGSGMV FS+ +P
Sbjct: 301 VPKFDPSLFKKPATKPGLPTFSQVFGKWLCDIAEQDEKVLGITPAMREGSGMVEFSQRFP 360

Query: 361 SQYFDVAIAEQHAVTLATGMAIAGYHPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAIDR 420
            QYFD AIAEQHAVTL  G A  GY P+VAIYSTFLQRGYDQLIHDVA+  LPV+FAIDR
Sbjct: 361 KQYFDAAIAEQHAVTLGAGFACEGYKPVVAIYSTFLQRGYDQLIHDVALQRLPVLFAIDR 420

Query: 421 AGIVGADGQTHQGAFDLSYMRCIPNMLIMAPADENECRQMLYTGHQHQ-GPSAVRYPRGN 479
            GIVGADG THQGAFDLS+MRCIPNM+IMAP+DENECRQMLYTG+ +  GPSAVRYPRG+
Sbjct: 421 GGIVGADGPTHQGAFDLSFMRCIPNMVIMAPSDENECRQMLYTGYCYDAGPSAVRYPRGS 480

Query: 480 GMGVELESSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNATVADMRF 539
             G     + TAL IGKG + R      G+++A+L+FGT L  AL AAE L+ATV DMRF
Sbjct: 481 ATGATQVEAMTALPIGKGVIKR-----LGKRIALLNFGTTLAAALTAAESLDATVVDMRF 535

Query: 540 VKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLNLGLPDQFIVQ 599
           VKPLD  L+K++AQTHDVLVT+EENAI GGAG+GV+E L + K  KPVL +GLPD+FI  
Sbjct: 536 VKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLELLQQLKMPKPVLQIGLPDEFIKH 595

Query: 600 GTQEEMHAELGLDGAGIERAIRDYLA 625
           G+ +E+  +L LD  G+   I  YLA
Sbjct: 596 GSPDEVIHDLQLDAEGMLAQINAYLA 621