Pairwise Alignments

Query, 626 a.a., 1-deoxy-D-xylulose-5-phosphate synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., 1-deoxy-D-xylulose 5-phosphate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  523 bits (1347), Expect = e-153
 Identities = 264/620 (42%), Positives = 394/620 (63%), Gaps = 20/620 (3%)

Query: 8   YPTLALANTPDELRSLPKEVLPKLCDELRTYLLNSVSQSSGHLASGLGTVELTVALHYVY 67
           Y  L   N+PD+LR L  + LP++CDELR  ++  +S + GH A+ LGTVELTVALHYVY
Sbjct: 7   YNLLNSINSPDDLRRLEVDQLPEVCDELRQDIIKELSCNPGHFAASLGTVELTVALHYVY 66

Query: 68  HTPFDHLIWDVGHQAYPHKILTGRRDQMPTIRQKDGLHPFPWREESEYDTLSVGHSSTSI 127
           +TP+D ++WDVGHQAY HKILTGRR+   T R+  G+ PFP  EESEYDT + GH+S SI
Sbjct: 67  NTPYDRIVWDVGHQAYGHKILTGRREAFSTNRKLGGIRPFPSPEESEYDTFTCGHASNSI 126

Query: 128 SAALGMAICAGKEGKD-RKVVSVIGDGAITAGMAFEAMNHAGDVHPDMLVVLNDNEMSIS 186
           SAALGMA+ A K+G D R V+++IGDG+++ G+AFE +N++     ++L++LNDN+M+I 
Sbjct: 127 SAALGMAVAAAKKGDDQRHVIAIIGDGSMSGGLAFEGLNNSSTTPNNLLIILNDNDMAID 186

Query: 187 ENVGALNNHLAQVLSGSLYTSIREGGKKVLSGIPPIKELVR----RTEEHLKGMVV-PGT 241
            +VG +  +L  + + + Y  +R    ++L  +  + +  R    R    LK M      
Sbjct: 187 RSVGGMKQYLFNLTTSNRYNQLRFKASRLLFKLGILNDERRKALIRFGNSLKSMAAQQQN 246

Query: 242 LFEELGFNYIGPVDGHDVLELIKTLKNMRELKGPQFLHVMTKKGKGYAPAEKDPIGYHGV 301
           +FE +   Y GP+DGHD+  L + L+++++LKGP+ LH+ T KGKG+APAEK    +H  
Sbjct: 247 IFEGMNIRYFGPIDGHDIKNLSRVLRDIKDLKGPKILHLHTIKGKGFAPAEKHATEWHAP 306

Query: 302 PKFDP--SHHSLPKSSNTKPTFSKIFGDFLCDMAAQDPKLMAITPAMREGSGMVRFSKEY 359
            KFDP      +  +    P F  +FG+ L ++A  +P+++ +TPAM  G  M     + 
Sbjct: 307 GKFDPVTGERFVANTEGMPPLFQDVFGNTLVELAEANPRIVGVTPAMPSGCSMNILMSKM 366

Query: 360 PSQYFDVAIAEQHAVTLATGMAIAGYHPIVAIYSTFLQRGYDQLIHDVAIMNLPVMFAID 419
           P + FDV IAE HAVT + GMA  G  P   IYS+F+QR YD +IHDVAI NLPV+  +D
Sbjct: 367 PKRAFDVGIAEGHAVTFSGGMAKDGLQPFCNIYSSFMQRAYDNIIHDVAIQNLPVVLCLD 426

Query: 420 RAGIVGADGQTHQGAFDLSYMRCIPNMLIMAPADENECRQMLYTGH-QHQGPSAVRYPRG 478
           RAG+VG DG TH GAFD++Y+R IPN+ I +P +E+E R+++YT     +GP  +RYPRG
Sbjct: 427 RAGLVGEDGPTHHGAFDMAYLRPIPNLTIASPMNEHELRRLMYTAQLPDKGPFVLRYPRG 486

Query: 479 NGMGVELESSFTALEIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLNATVA--- 535
            G+ V+ +     + +GKGR ++     +G+ +A++S G +   A  A  +  +      
Sbjct: 487 RGVLVDWKCPLEEIPVGKGRKLK-----DGKDIAVISIGPIGNKARSAIARAESESGRSI 541

Query: 536 ---DMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQLKPVLNLGL 592
              D+RF+KPLDE L+ ++ +T   +VT+E+  I GG G+ V+EF+   +    V  +G+
Sbjct: 542 AHYDLRFLKPLDEELLHEVGRTFRHIVTIEDGTIQGGMGSAVLEFMADHEYTPTVKRIGI 601

Query: 593 PDQFIVQGTQEEMHAELGLD 612
           PD+F+  GT  E++   G+D
Sbjct: 602 PDKFVQHGTVAELYQLCGMD 621