Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N1B4

 Score = 95.1 bits (235), Expect = 1e-24
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 15/226 (6%)

Query: 4   IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLVF 63
           IVY+D+ L+ VNKP G+ VH      +      + LR    + +  +HRLDR TSG+L+ 
Sbjct: 97  IVYEDKALIVVNKPCGIAVHGGSGLTYGVIEAFRQLRPDC-KELELVHRLDRDTSGLLMI 155

Query: 64  ALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKE- 121
           A    +   +        ++K Y A+VRG W      +   L +   +  ++  + D+E 
Sbjct: 156 AKKRSMLRHLHTALRGDGVDKRYMALVRGNWATSIKQVRASLGKSNLRSGERMVEVDEEE 215

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            + +VT ++ L +       G FAT    L+E +P TGR HQ+R H  H  H I GDT +
Sbjct: 216 GKESVTVFKVLRRF------GDFAT----LIEAKPITGRTHQIRVHTLHAGHCIAGDTKY 265

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVW 227
           GD   ++  R+    +RL LHA  L    P   + L ++A +DE+W
Sbjct: 266 GDEGFSKEIRD-LGGKRLFLHAYMLTVPLPDGGE-LKLQAPVDEMW 309