Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  108 bits (270), Expect = 1e-28
 Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 16/234 (6%)

Query: 4   IVYQDEYLVAVNKPAGMLVHR-SWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLV 62
           IVY+D+ L+ +NKPAG+ VH  S L     E + Q   D   + +  +HRLDR TSG+L+
Sbjct: 97  IVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQLRPD--AKELELVHRLDRDTSGLLM 154

Query: 63  FALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKE 121
            A    +   +        ++K Y A+VRG W      ++ PL +   +  ++  +  ++
Sbjct: 155 VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETSKKQVNAPLLKNTLRSGERMVEVTED 214

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            + A+T +  L +       G+FAT    L+E +P TGR HQ+R H  H  H I GD+ +
Sbjct: 215 GKEALTLFHVLRRF------GEFAT----LVEAKPVTGRTHQIRVHARHAGHSIAGDSKY 264

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVWQGLLSEFG 235
           GD    R  RE    +RL LHA  LR   P   + L + A +DE+W   L   G
Sbjct: 265 GDEEFTREIRE-LGGKRLFLHAYALRVPLPDGGE-LSLEAPVDEMWARTLERLG 316