Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (271), Expect = 7e-29
 Identities = 76/218 (34%), Positives = 110/218 (50%), Gaps = 17/218 (7%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           L+I Y D  L+ +NKP+G+L +           + +  R  +      +HRLD  TSG++
Sbjct: 14  LDIRYIDRDLIIINKPSGLLSNPGMAAHTHDSAITRLCR--LYPEAILVHRLDCATSGIM 71

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIE-EANVLDYPLKEELDKIADKFAKQD- 119
           VFA S +  S +   F N + EK Y A V G IE +   +D PL +  D+    + K D 
Sbjct: 72  VFARSKKAESNLKTQFQNRDTEKRYLAQVAGIIEQDEGTIDLPLGK--DRSNPPWQKVDM 129

Query: 120 KEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDT 179
            E + AVT YR LA+ E              L+ ++P+TGR HQLR HM  L HPI+GD 
Sbjct: 130 AEGRPAVTHYRVLARRE-----------NSTLVALEPETGRTHQLRVHMLSLGHPILGDD 178

Query: 180 THGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPL 217
            +G            ++ RL LHA  L F HP++ +P+
Sbjct: 179 FYGRTQEFGQGTVEEASPRLCLHAERLSFKHPWSNKPM 216