Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  106 bits (264), Expect = 7e-28
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 14/222 (6%)

Query: 4   IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLVF 63
           I+++D+ ++ +NKPAG+ VH      +     +++LR    + +  +HRLDR TSGVL+ 
Sbjct: 108 ILFEDKQIIVLNKPAGIAVHGGSGVDYGVIESLRSLRPTC-KFLELVHRLDRDTSGVLLI 166

Query: 64  ALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKEA 122
           A        +     N +M+K Y A+VRG W E   V+  PL +   K  ++  + + E 
Sbjct: 167 AKKRMALRHLHDQLRNKQMQKVYQALVRGQWQEHDRVVKAPLLKITLKSGERIVRVNSEG 226

Query: 123 QSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHG 182
           + + T +R L + +              L+E  P TGR HQ+R H  +  HPI  D  + 
Sbjct: 227 KPSETRFRVLRRFD-----------EASLVEASPVTGRTHQIRVHCQYQGHPIACDDKYS 275

Query: 183 DGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLD 224
           +   +   R     QRL LHA++L F HP ++  + ++A LD
Sbjct: 276 EQKFDDAMRAK-GLQRLFLHAAQLTFTHPESETQMTVQAPLD 316