Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  286 bits (731), Expect = 4e-82
 Identities = 136/240 (56%), Positives = 174/240 (72%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           +EI+Y+DE +VA++KPAG+LVHR++L + E  F MQ  RD +G HVFP+HRLDRPTSGVL
Sbjct: 10  IEILYEDEAMVAIHKPAGLLVHRTYLARKEHWFAMQLTRDLVGCHVFPVHRLDRPTSGVL 69

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANVLDYPLKEELDKIADKFAKQDKE 121
           +FA SS++A+ +   FA+H + K Y A+VRG + +A VLDY LKEELD++ADK    DK 
Sbjct: 70  LFAKSSEVANSLCGQFASHSIRKHYLALVRGNMFDAGVLDYALKEELDELADKDVDPDKP 129

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
           AQ A+TAYRPL   E+P ++G++ ++R+ LM +QP+TGRKHQLRRHMAHLRHPIVGDTTH
Sbjct: 130 AQEAITAYRPLLNSEIPYSSGRYPSSRFALMHLQPQTGRKHQLRRHMAHLRHPIVGDTTH 189

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVWQGLLSEFGWQESLL 241
           GDG  NR FREHF   RL L A  L   HP T  P+ I   L+  W  + S  GW E  L
Sbjct: 190 GDGKQNRFFREHFGVNRLWLIAKRLELTHPLTGAPIAIETELEPEWLDVFSGLGWDEETL 249