Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridine synthase from Parabacteroides merdae CL09T00C40

 Score = 94.4 bits (233), Expect = 2e-24
 Identities = 67/238 (28%), Positives = 121/238 (50%), Gaps = 27/238 (11%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWL-DKHETEFVMQTLRDQIGQ----HVFPLHRLDRP 56
           +E++Y+D +++AVNK    +V      D   ++ +   L+++  +     V   HRLDRP
Sbjct: 1   MEVIYEDNHIIAVNKTCREIVQGDKTGDTPLSDMLKAWLKEKYCKPGNVFVGVTHRLDRP 60

Query: 57  TSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGW--IEEANVLDYPLKEELDKIADK 114
            SGV++FA +S+  + +  MF   E++KTY AIV+     EE  ++++ ++ E    +  
Sbjct: 61  VSGVVLFAKTSKALARLNEMFRVGEVKKTYWAIVKNCPPAEEGELVNWLVRNEKQNKSYA 120

Query: 115 FAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHP 174
           +  +   A+ AV  Y+ +A+           +  Y L+ +  KTGR HQ+R  +A +  P
Sbjct: 121 YDTERTNAKKAVLHYKVIAR-----------SDNYYLLAIDLKTGRHHQIRCQLAKMGCP 169

Query: 175 IVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL--DEVWQGL 230
           I GD  +G       F        + LH+    F+HP ++QP+ I A +  D +W+ +
Sbjct: 170 IKGDLKYG-------FPRSNPDGGISLHSRSAEFIHPVSKQPVSIVAPVPADSLWKAM 220