Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., RNA pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  104 bits (259), Expect = 2e-27
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 27/235 (11%)

Query: 3   EIVYQDEYLVAVNKPAGMLVHRSW-----LDKHETEFVMQTLRDQIGQHVFPLHRLDRPT 57
           +I+++D +L+A+NK AG +V         LD+   +++ +      G  +  +HRLDRP 
Sbjct: 7   DILFEDNHLIAINKRAGDIVQVDETGDEPLDEQVKKYIAKKYNKPNGAFLGVVHRLDRPV 66

Query: 58  SGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEE--ANVLDYPLKEELDKIADKF 115
           SGV++FA +S+    +  +F N E++KTY A+V+   E+  A ++ + +K     +   +
Sbjct: 67  SGVILFAKTSKALERMNAVFKNREVKKTYWAVVKNKPEKESATLVHWLVKNPQKNVVSYY 126

Query: 116 AKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPI 175
             +   +Q A  +Y+  AKV             Y L+E+ P TGR HQ+R  ++ +  PI
Sbjct: 127 NTEVTGSQRAELSYKVKAKV-----------GDYYLLEVDPLTGRSHQIRVQLSSMGCPI 175

Query: 176 VGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGL--DEVWQ 228
           +GD  +G       +        + LHA  L+F+HP  ++P+ I A L  D  W+
Sbjct: 176 MGDNKYG-------YPRGSRKGSICLHARRLQFIHPVKKEPVNIFAKLPVDGFWE 223