Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  107 bits (268), Expect = 2e-28
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 16/232 (6%)

Query: 4   IVYQDEYLVAVNKPAGMLVHR-SWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVLV 62
           I+++D+ ++ +NKPAG+ VH  S +D    E  M++LR Q  + +  +HRLD+ TSGVL+
Sbjct: 108 ILFEDKAIIVLNKPAGIAVHGGSGVDFGVIE-AMRSLRPQ-QKFLELVHRLDKETSGVLL 165

Query: 63  FALSSQIASEVMPMFANHEMEKTYHAIVRG-WIEEANVLDYPLKEELDKIADKFAKQDKE 121
            A   +    +       +M+K Y A+VRG W     V++ PL +   K  ++  + ++E
Sbjct: 166 IAKKRRALKHLHDQLRYKKMQKDYMALVRGEWQNHDKVINAPLLKLTLKSGERIVRVNQE 225

Query: 122 AQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLRHPIVGDTTH 181
            + + T ++ + + +              L++  P TGR HQ+R H  +  HPI  D  +
Sbjct: 226 GKPSETRFKIMQRYQ-----------GATLVQASPVTGRTHQIRVHCQYAGHPIACDEKY 274

Query: 182 GDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPLVIRAGLDEVWQGLLSE 233
            +   +   RE     RL LHA++L+F HP +++ + ++A LD+  Q LL++
Sbjct: 275 SEQKFDDAMRE-LGLNRLFLHAAQLKFTHPVSEEVMQVKAPLDKALQDLLNK 325