Pairwise Alignments

Query, 244 a.a., tRNA pseudouridine(65) synthase TruC from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  106 bits (265), Expect = 3e-28
 Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 37/225 (16%)

Query: 2   LEIVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFPLHRLDRPTSGVL 61
           LEI+++D+ ++ VNKP+G+L        +      + LRD     +  +HRLD  TSG++
Sbjct: 14  LEILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYTRVLRDHPNAQI--VHRLDMATSGII 71

Query: 62  VFALSSQIASEVMPMFANHEMEKTYHAIVRGWIE-EANVLDYPL--------KEELDKIA 112
           V AL      E+   F + E  K Y+A V G ++ E   +DYPL        K+++D   
Sbjct: 72  VVALRRSAERELKRQFRDRETHKIYYARVAGHLKAEQGSVDYPLICDWPNRPKQKVDHQI 131

Query: 113 DKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHMAHLR 172
            K +K         T +  +++ +           R  L+++ P TGR HQLR HM  + 
Sbjct: 132 GKASK---------TLFEVISRAK-----------RSTLVKLTPITGRSHQLRVHMMAIG 171

Query: 173 HPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMHPYTQQPL 217
           HPI+GD  + D +  RL      A RL+LHA  L   HPY++QP+
Sbjct: 172 HPILGDNFYADPLAKRL------APRLLLHAQSLSLTHPYSKQPM 210